24 July, 2021
--- title: Example markdown author: D. Author date: 16-06-2020 --- This is the title ===================== ## Section 1 A paragraph of text containing a word that is **emphasised** or ~~strikethrough~~. Followed by an unordered list: - item 1 - item 2 Or perhaps an enumerated list: 1. item 1 2. item 2 ### Subsection 1.1 There might be a [link](https://www.markdownguide.org/) or even a table: +-----------+---------+-----------------------+ | Item | Example | Description | +===========+=========+=======================+ | numeric | 12.34 | floating point number | +-----------+---------+-----------------------+ | character | 'Site' | words | +-----------+---------+-----------------------+ | ... | | | +-----------+---------+-----------------------+
--- title: Example markdown author: D. Author date: 16-06-2020 --- This is the title ===================== ## Section 1 A paragraph of text containing a word that is **emphasised** or ~~strikethrough~~. Followed by an unordered list: - item 1 - item 2 Or perhaps an enumerated list: 1. item 1 2. item 2 ### Subsection 1.1 There might be a [link](https://www.markdownguide.org/) or even a table: +-----------+---------+-----------------------+ | Item | Example | Description | +===========+=========+=======================+ | numeric | 12.34 | floating point number | +-----------+---------+-----------------------+ | character | 'Site' | words | +-----------+---------+-----------------------+ | ... | | | +-----------+---------+-----------------------+
--- title: Example markdown author: D. Author date: 16-06-2020 --- This is the title ===================== ## Section 1 A paragraph of text containing a word that is **emphasised** or ~~strikethrough~~. Followed by an unordered list: - item 1 - item 2 Or perhaps an enumerated list: 1. item 1 2. item 2 ### Subsection 1.1 There might be a [link](https://www.markdownguide.org/) or even a table: +-----------+---------+-----------------------+ | Item | Example | Description | +===========+=========+=======================+ | numeric | 12.34 | floating point number | +-----------+---------+-----------------------+ | character | 'Site' | words | +-----------+---------+-----------------------+ | ... | | | +-----------+---------+-----------------------+
--- title: Example markdown author: D. Author date: 16-06-2020 --- This is the title ===================== ## Section 1 A paragraph of text containing a word that is **emphasised** or ~~strikethrough~~. Followed by an unordered list: - item 1 - item 2 Or perhaps an enumerated list: 1. item 1 2. item 2 ### Subsection 1.1 There might be a [link](https://www.markdownguide.org/) or even a table: +-----------+---------+-----------------------+ | Item | Example | Description | +===========+=========+=======================+ | numeric | 12.34 | floating point number | +-----------+---------+-----------------------+ | character | 'Site' | words | +-----------+---------+-----------------------+ | ... | | | +-----------+---------+-----------------------+
https://www.rstudio.com/wp-content/uploads/2015/03/rmarkdown-reference.pdf
---
title: Example markdown
author: D. Author
date: 16-06-2020
---
# This is the title
```{r summary, eval=TRUE, results='markup'}
x <- rnorm(10)
summary(x)
`` `
rmarkdown::render('file.Rmd', output_format='html_document')
plos
pnas
elsevier
`` `{r readData, eval=TRUE}
mydata <- read.csv('data/myData.csv')
`` `
A chunk should represent a unit of work
---
title: 'Example analysis'
author: D. Author
date: 24-07-2021
---
Load the necessary packages.
`` `{r loadLibraries, eval=TRUE}
library(tidyverse)
`` `
Read in my data
`` `{r readData, eval=TRUE}
mydata <- read.csv('data/myData.csv')
`` `
Process the data:
- create a log-transformed version of `Var`
`` `{r processData, eval=TRUE}
mydata <- myData %>% mutate(lVar = log(Var))
`` `
---
title: 'Example analysis'
author: D. Author
date: 24-07-2021
---
`` `{r, eval=TRUE}
knitr::read_chunk('script.R')
`` `
Load the necessary packages.
`` `{r loadLibraries, eval=TRUE}
`` `
Read in my data
`` `{r readData, eval=TRUE}
`` `
Process the data:
- create a log-transformed version of `Var`
`` `{r processData, eval=TRUE}
`` `